Overview
Esophageal atresia (EA) is a congenital malformation in which the esophagus (the tube that connects the mouth to the stomach) fails to develop as a continuous passage. Instead, the esophagus ends in a blind pouch, preventing food and saliva from reaching the stomach normally. In the majority of cases (approximately 85%), esophageal atresia occurs together with a tracheoesophageal fistula (TEF), an abnormal connection between the esophagus and the trachea (windpipe). This condition is typically detected at birth or shortly thereafter when the newborn presents with excessive drooling, choking, coughing, and cyanosis (bluish skin discoloration) during the first feeding attempt. Inability to pass a nasogastric tube into the stomach is a classic diagnostic finding. Esophageal atresia primarily affects the gastrointestinal and respiratory systems. Approximately 50% of affected infants have additional associated anomalies, most commonly as part of the VACTERL association, which includes vertebral defects, anorectal malformations, cardiac defects, tracheoesophageal fistula, renal anomalies, and limb abnormalities. Cardiac anomalies are the most common associated malformations and are a significant determinant of prognosis. Other associated conditions may include chromosomal abnormalities such as trisomy 18 or trisomy 21. The primary treatment for esophageal atresia is surgical repair, ideally performed within the first few days of life. The standard procedure involves closing the tracheoesophageal fistula (if present) and performing a primary anastomosis to reconnect the two ends of the esophagus. In cases of long-gap esophageal atresia, where the distance between the esophageal segments is too great for primary repair, delayed repair techniques or esophageal replacement procedures (using stomach, colon, or jejunum) may be necessary. Survival rates have improved dramatically with advances in neonatal surgery and intensive care, now exceeding 90% in infants without severe associated anomalies. Long-term complications may include gastroesophageal reflux, esophageal stricture, dysphagia, tracheomalacia, and recurrent respiratory infections, requiring ongoing multidisciplinary follow-up.
Also known as:
Clinical phenotype terms— hover any for plain English:
Multifactorial
Caused by a mix of several genes and environmental factors
Neonatal
Begins at or shortly after birth (first 4 weeks)
FDA & Trial Timeline
10 eventsUniversity Children's Hospital, Zurich
Hoffmann-La Roche — PHASE1
Sun Yat-sen University — NA
Beijing Biotech — PHASE1, PHASE2
Second Affiliated Hospital, School of Medicine, Zhejiang University — PHASE1
University of Sao Paulo General Hospital
University of Texas at Austin — NA
Guangdong Provincial People's Hospital
Chongqing Precision Biotech Co., Ltd — PHASE1
Data sourced from FDA regulatory filings and ClinicalTrials.gov. Updated periodically.
Treatments
1 availableEthamolin
indicated for the treatment of patients with esophageal varices that have recently bled, to prevent rebleeding
Treatment Centers
8 centersBaylor College of Medicine Rare Disease Center ↗
Baylor College of Medicine
📍 Houston, TX
🏥 NORDStanford Medicine Rare Disease Center ↗
Stanford Medicine
📍 Stanford, CA
🔬 UDNNIH Clinical Center Undiagnosed Diseases Program ↗
National Institutes of Health
📍 Bethesda, MD
🔬 UDNUCLA UDN Clinical Site ↗
UCLA Health
📍 Los Angeles, CA
🔬 UDNBaylor College of Medicine UDN Clinical Site ↗
Baylor College of Medicine
📍 Houston, TX
🔬 UDNHarvard/MGH UDN Clinical Site ↗
Massachusetts General Hospital
📍 Boston, MA
🏥 NORDMayo Clinic Center for Individualized Medicine ↗
Mayo Clinic
📍 Rochester, MN
👤 Mayo Clinic Center for Individualized Medicine
🏥 NORDUCLA Rare Disease Day Program ↗
UCLA Health
📍 Los Angeles, CA
Travel Grants
No travel grants are currently matched to Esophageal atresia.
Community
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Start the conversation →Latest news about Esophageal atresia
Disease timeline:
New recruiting trial: Anti-CEA CAR-T Cells to Treat Colorectal Liver Metastases
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Clinical Study on Chimeric Antigen Receptor T Lymphocyte (CAR-T) Targeting CEA for the Treatment of CEA - Positive Advanced Lung Cancer
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Ga-68-FAPI-46 PET for CRC Recurrence Detection in Elevated CEA
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: CEA Targeting Chimeric Antigen Receptor T Lymphocytes (CAR-T) in the Treatment of CEA Positive Advanced Solid Tumors
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Place Activation in Urban Peripheries: the 'Comunidades y Espacios Activos" Project (CEA)
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Correlation Between Carotid Stump Pressure and Interhemispheric rSO₂ Asymmetry During Awake Carotid Endarterectomy
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Urgent Carotid Endarterectomy (CEA) Versus Delayed CEA in Symptomatic Carotid Stenosis (SPREAD-STACI II)
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: CEA CAR-T Therapy After Cytoreduction in Colorectal Cancer Patients With Peritoneal Metastases
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Anti-CEA CAR-T for Advanced CEA-Positive Lung Carcinoma
A new clinical trial is recruiting patients for Esophageal atresia
New recruiting trial: Dynamic Multi-omics Integration Model to Predict Neoadjuvant Therapy Response in Locally Advanced Rectal Cancer
A new clinical trial is recruiting patients for Esophageal atresia
Caregiver Resources
NORD Caregiver Resources
Support, advocacy, and financial assistance for caregivers of rare disease patients.
Mental Health Support
Rare disease caregiving can be isolating. Connect with counseling and peer support.
Family & Caregiver Grants
Financial assistance programs specifically for caregivers of rare disease patients.
Social Security Disability
Learn how rare disease patients may qualify for SSDI/SSI benefits.
Common questions about Esophageal atresia
What is Esophageal atresia?
Esophageal atresia (EA) is a congenital malformation in which the esophagus (the tube that connects the mouth to the stomach) fails to develop as a continuous passage. Instead, the esophagus ends in a blind pouch, preventing food and saliva from reaching the stomach normally. In the majority of cases (approximately 85%), esophageal atresia occurs together with a tracheoesophageal fistula (TEF), an abnormal connection between the esophagus and the trachea (windpipe). This condition is typically detected at birth or shortly thereafter when the newborn presents with excessive drooling, choking, c
How is Esophageal atresia inherited?
Esophageal atresia follows a multifactorial inheritance pattern. Genetic counseling can help families understand recurrence risk and testing options.
At what age does Esophageal atresia typically begin?
Typical onset of Esophageal atresia is neonatal. Age of onset can vary across affected individuals.
Are there clinical trials for Esophageal atresia?
Yes — 9 recruiting clinical trials are currently listed for Esophageal atresia on UniteRare. See the clinical trials section on this page for phase, sponsor, and site details sourced from ClinicalTrials.gov.
Which specialists treat Esophageal atresia?
25 specialists and care centers treating Esophageal atresia are listed on UniteRare, sourced from ClinicalTrials.gov principal investigators, published research, and the NPPES NPI registry.