Congenital intrinsic factor deficiency

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ORPHA:332OMIM:243320D51.0
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1FDA treatments1Specialists8Treatment centers

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UniteRare data is sourced from FDA.gov, ClinicalTrials.gov, Orphanet, OMIM, and NORD.
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Overview

Congenital intrinsic factor deficiency (also known as hereditary intrinsic factor deficiency or congenital pernicious anemia) is a rare inherited disorder characterized by the absence or dysfunction of gastric intrinsic factor (IF), a glycoprotein produced by parietal cells of the stomach that is essential for the absorption of vitamin B12 (cobalamin) in the terminal ileum. Without functional intrinsic factor, vitamin B12 cannot be adequately absorbed, leading to severe vitamin B12 deficiency despite normal dietary intake. The disease primarily affects the hematologic and nervous systems. Patients typically present in early childhood, usually between the ages of 1 and 5 years, with megaloblastic anemia — characterized by fatigue, pallor, weakness, failure to thrive, and irritability. Neurological manifestations may develop if the condition is left untreated and can include developmental delay, hypotonia, peripheral neuropathy, and subacute combined degeneration of the spinal cord. Unlike autoimmune pernicious anemia seen in adults, congenital intrinsic factor deficiency is not associated with gastric atrophy or anti-intrinsic factor antibodies, and gastric acid secretion remains normal. The condition is caused by pathogenic variants in the GIF gene (encoding gastric intrinsic factor) and follows an autosomal recessive inheritance pattern. Diagnosis is established through laboratory findings of low serum vitamin B12, megaloblastic anemia, normal gastric histology, and absence of anti-intrinsic factor or anti-parietal cell antibodies, confirmed by molecular genetic testing. Treatment consists of lifelong parenteral (intramuscular) vitamin B12 injections, which effectively correct the anemia and prevent neurological complications. With early diagnosis and consistent treatment, patients can expect a normal quality of life.

Also known as:

Clinical phenotype terms— hover any for plain English:

Megaloblastic erythroid hyperplasiaHP:0200143Anti-intrinsic factor antibody positivityHP:6000344Absence of intrinsic factorHP:0005219Megaloblastic anemiaHP:0001889Decreased circulating vitamin B12 concentrationHP:0100502HyperhomocystinemiaHP:0002160Methylmalonic acidemiaHP:0002912Atrophy of the spinal cordHP:0006827Methylmalonic aciduriaHP:0012120
Inheritance

Autosomal recessive

Passed on when both parents carry the same gene change; often skips generations

Age of Onset

Childhood

Begins in childhood, roughly ages 1 to 12

Orphanet ↗OMIM ↗NORD ↗

FDA & Trial Timeline

3 events
Sep 2025A Real-world Prospective Observational Study on the Efficacy and Safety of L-AmB(Liposomal Amphotericin B) for br- IFD(Breakthrough Invasive Fungal Disease) in Children and Adolescent Patients With Hematological Malignancies Receiving Triazoles or Echinocandins Prophylaxis

Institute of Hematology & Blood Diseases Hospital, China

TrialRECRUITING
May 2025Liposomal Amphotericin B and Isavuconazole/Posaconazole in Br-IFD( Breakthrough Invasive Fungal Disease) in Patients With Malignant Hematological Diseases

Institute of Hematology & Blood Diseases Hospital, China

TrialRECRUITING
Jun 2024Survey on the Current Status of IFD Diagnosis and Treatment by Intensive Care Physicians in Sichuan Province (IFS)

Sichuan Provincial People's Hospital

TrialNOT YET RECRUITING

Data sourced from FDA regulatory filings and ClinicalTrials.gov. Updated periodically.

Treatments

1 available

Leucovorin calcium

Leucovorin· Immunex Corporation

Leucovorin calcium is indicated in the treatment of megaloblastic anemias due to folic acid deficiency when oral therapy is not feasible

No actively recruiting trials found for Congenital intrinsic factor deficiency at this time.

New trials open frequently. Follow this disease to get notified.

Search ClinicalTrials.gov ↗Join the Congenital intrinsic factor deficiency community →

Specialists

1 foundView all specialists →

Treatment Centers

8 centers
🏥 NORD

Baylor College of Medicine Rare Disease Center

Baylor College of Medicine

📍 Houston, TX

🏥 NORD

Stanford Medicine Rare Disease Center

Stanford Medicine

📍 Stanford, CA

🔬 UDN

NIH Clinical Center Undiagnosed Diseases Program

National Institutes of Health

📍 Bethesda, MD

🔬 UDN

UCLA UDN Clinical Site

UCLA Health

📍 Los Angeles, CA

🔬 UDN

Baylor College of Medicine UDN Clinical Site

Baylor College of Medicine

📍 Houston, TX

🔬 UDN

Harvard/MGH UDN Clinical Site

Massachusetts General Hospital

📍 Boston, MA

🏥 NORD

Mayo Clinic Center for Individualized Medicine

Mayo Clinic

📍 Rochester, MN

👤 Mayo Clinic Center for Individualized Medicine

🏥 NORD

UCLA Rare Disease Day Program

UCLA Health

📍 Los Angeles, CA

Travel Grants

No travel grants are currently matched to Congenital intrinsic factor deficiency.

Search all travel grants →NORD Financial Assistance ↗

Community

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Latest news about Congenital intrinsic factor deficiency

Disease timeline:

New recruiting trial: A Real-world Prospective Observational Study on the Efficacy and Safety of L-AmB(Liposomal Amphotericin B) for br- IFD(Breakthrough Invasive Fungal Disease) in Children and Adolescent Patients With Hematological Malignancies Receiving Triazoles or Echinocandins Prophylaxis

A new clinical trial is recruiting patients for Congenital intrinsic factor deficiency

New recruiting trial: Liposomal Amphotericin B and Isavuconazole/Posaconazole in Br-IFD( Breakthrough Invasive Fungal Disease) in Patients With Malignant Hematological Diseases

A new clinical trial is recruiting patients for Congenital intrinsic factor deficiency

Caregiver Resources

NORD Caregiver Resources

Support, advocacy, and financial assistance for caregivers of rare disease patients.

Mental Health Support

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Family & Caregiver Grants

Financial assistance programs specifically for caregivers of rare disease patients.

Social Security Disability

Learn how rare disease patients may qualify for SSDI/SSI benefits.

Common questions about Congenital intrinsic factor deficiency

What is Congenital intrinsic factor deficiency?

Congenital intrinsic factor deficiency (also known as hereditary intrinsic factor deficiency or congenital pernicious anemia) is a rare inherited disorder characterized by the absence or dysfunction of gastric intrinsic factor (IF), a glycoprotein produced by parietal cells of the stomach that is essential for the absorption of vitamin B12 (cobalamin) in the terminal ileum. Without functional intrinsic factor, vitamin B12 cannot be adequately absorbed, leading to severe vitamin B12 deficiency despite normal dietary intake. The disease primarily affects the hematologic and nervous systems. Pat

How is Congenital intrinsic factor deficiency inherited?

Congenital intrinsic factor deficiency follows a autosomal recessive inheritance pattern. Genetic counseling can help families understand recurrence risk and testing options.

At what age does Congenital intrinsic factor deficiency typically begin?

Typical onset of Congenital intrinsic factor deficiency is childhood. Age of onset can vary across affected individuals.

Which specialists treat Congenital intrinsic factor deficiency?

1 specialists and care centers treating Congenital intrinsic factor deficiency are listed on UniteRare, sourced from ClinicalTrials.gov principal investigators, published research, and the NPPES NPI registry.