Overview
Hypotonia-cystinuria syndrome (HCS) is a rare contiguous gene deletion syndrome caused by deletions on chromosome 2p21 that encompass at least two adjacent genes: SLC3A1 (associated with cystinuria) and PREPL (associated with hypotonia). Because the deletion removes both genes simultaneously, affected individuals present with features of both conditions. The syndrome is also known as 2p21 deletion syndrome. The hallmark features of hypotonia-cystinuria syndrome include neonatal and infantile hypotonia (low muscle tone), failure to thrive, feeding difficulties, and cystinuria — a condition in which excessive amounts of the amino acid cystine are excreted in the urine, predisposing individuals to recurrent kidney stone formation. Affected infants typically present at birth or in the neonatal period with marked hypotonia and poor feeding requiring nutritional support. Growth retardation and developmental delay may also be observed. Some patients may exhibit additional features depending on the extent of the chromosomal deletion, which can occasionally involve neighboring genes. There is no cure for hypotonia-cystinuria syndrome, and management is supportive and symptom-directed. Treatment of cystinuria involves high fluid intake, urinary alkalinization, and in some cases thiol-binding drugs (such as D-penicillamine or tiopronin) to reduce cystine stone formation. Hypotonia and feeding difficulties are managed with physical therapy, occupational therapy, and nutritional support. Regular monitoring of renal function and urinary cystine levels is essential. Early intervention programs can help optimize developmental outcomes in affected children.
Also known as:
Clinical phenotype terms— hover any for plain English:
Autosomal recessive
Passed on when both parents carry the same gene change; often skips generations
Neonatal
Begins at or shortly after birth (first 4 weeks)
FDA & Trial Timeline
2 eventsFondazione IRCCS Policlinico San Matteo di Pavia
Tomsk National Research Medical Center of the Russian Academy of Sciences
Data sourced from FDA regulatory filings and ClinicalTrials.gov. Updated periodically.
Treatments
No FDA-approved treatments are currently listed for Hypotonia-cystinuria syndrome.
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Treatment Centers
8 centersBaylor College of Medicine Rare Disease Center ↗
Baylor College of Medicine
📍 Houston, TX
🏥 NORDStanford Medicine Rare Disease Center ↗
Stanford Medicine
📍 Stanford, CA
🔬 UDNNIH Clinical Center Undiagnosed Diseases Program ↗
National Institutes of Health
📍 Bethesda, MD
🔬 UDNUCLA UDN Clinical Site ↗
UCLA Health
📍 Los Angeles, CA
🔬 UDNBaylor College of Medicine UDN Clinical Site ↗
Baylor College of Medicine
📍 Houston, TX
🔬 UDNHarvard/MGH UDN Clinical Site ↗
Massachusetts General Hospital
📍 Boston, MA
🏥 NORDMayo Clinic Center for Individualized Medicine ↗
Mayo Clinic
📍 Rochester, MN
👤 Mayo Clinic Center for Individualized Medicine
🏥 NORDUCLA Rare Disease Day Program ↗
UCLA Health
📍 Los Angeles, CA
Travel Grants
No travel grants are currently matched to Hypotonia-cystinuria syndrome.
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Start the conversation →Latest news about Hypotonia-cystinuria syndrome
Disease timeline:
New recruiting trial: Ultrastructural Characteristics of Mitochondria in Cardiomyocytes in Heart Failure
A new clinical trial is recruiting patients for Hypotonia-cystinuria syndrome
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Common questions about Hypotonia-cystinuria syndrome
What is Hypotonia-cystinuria syndrome?
Hypotonia-cystinuria syndrome (HCS) is a rare contiguous gene deletion syndrome caused by deletions on chromosome 2p21 that encompass at least two adjacent genes: SLC3A1 (associated with cystinuria) and PREPL (associated with hypotonia). Because the deletion removes both genes simultaneously, affected individuals present with features of both conditions. The syndrome is also known as 2p21 deletion syndrome. The hallmark features of hypotonia-cystinuria syndrome include neonatal and infantile hypotonia (low muscle tone), failure to thrive, feeding difficulties, and cystinuria — a condition in
How is Hypotonia-cystinuria syndrome inherited?
Hypotonia-cystinuria syndrome follows a autosomal recessive inheritance pattern. Genetic counseling can help families understand recurrence risk and testing options.
At what age does Hypotonia-cystinuria syndrome typically begin?
Typical onset of Hypotonia-cystinuria syndrome is neonatal. Age of onset can vary across affected individuals.
Which specialists treat Hypotonia-cystinuria syndrome?
7 specialists and care centers treating Hypotonia-cystinuria syndrome are listed on UniteRare, sourced from ClinicalTrials.gov principal investigators, published research, and the NPPES NPI registry.