Chromosome Y microdeletion syndrome

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ORPHA:1646OMIM:400042Q98.6
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Overview

Chromosome Y microdeletion syndrome, also known as Y chromosome microdeletion or AZF (azoospermia factor) microdeletion, is a genetic condition caused by the loss of small segments of DNA on the Y chromosome. These microdeletions primarily affect the long arm of the Y chromosome (Yq11) in regions known as AZFa, AZFb, and AZFc, which contain genes critical for normal sperm production (spermatogenesis). The condition is one of the most common known genetic causes of male infertility. The primary body system affected is the male reproductive system. Men with Y chromosome microdeletions typically present with severely impaired sperm production, ranging from oligozoospermia (very low sperm count) to complete azoospermia (absence of sperm in the ejaculate). The severity of the condition depends on which AZF region is deleted: AZFa deletions generally result in Sertoli cell-only syndrome with complete absence of germ cells; AZFb deletions typically cause maturation arrest of spermatogenesis; and AZFc deletions, which are the most common, are associated with a variable phenotype ranging from oligozoospermia to azoospermia. Physical examination is often normal, and the condition is usually discovered during evaluation for infertility. Testicular size may be reduced in some cases. There is no curative treatment for Y chromosome microdeletion syndrome. However, assisted reproductive technologies (ART), particularly intracytoplasmic sperm injection (ICSI), can help affected men achieve biological fatherhood when residual sperm can be retrieved from the ejaculate or through testicular sperm extraction (TESE). Men with AZFc deletions have the best prognosis for successful sperm retrieval, while those with complete AZFa or AZFb deletions rarely have retrievable sperm. Genetic counseling is essential, as male offspring conceived through ART will inherit the Y chromosome microdeletion and will likely also experience fertility problems.

Also known as:

Clinical phenotype terms— hover any for plain English:

Abnormal spermatogenesisHP:0008669Non-obstructive azoospermiaHP:0011961OligozoospermiaHP:0000798
Inheritance

Variable

Can be inherited in different ways depending on the underlying gene

Age of Onset

Adult

Begins in adulthood (age 18 or older)

Orphanet ↗OMIM ↗NORD ↗

FDA & Trial Timeline

1 event
Oct 1985

Moctanin: FDA approved

For dissolution of cholesterol gallstones retained in the common bile duct.

FDAcompleted

Data sourced from FDA regulatory filings and ClinicalTrials.gov. Updated periodically.

Treatments

No FDA-approved treatments are currently listed for Chromosome Y microdeletion syndrome.

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No actively recruiting trials found for Chromosome Y microdeletion syndrome at this time.

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No specialists are currently listed for Chromosome Y microdeletion syndrome.

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Treatment Centers

8 centers
🏥 NORD

Baylor College of Medicine Rare Disease Center

Baylor College of Medicine

📍 Houston, TX

🏥 NORD

Stanford Medicine Rare Disease Center

Stanford Medicine

📍 Stanford, CA

🔬 UDN

NIH Clinical Center Undiagnosed Diseases Program

National Institutes of Health

📍 Bethesda, MD

🔬 UDN

UCLA UDN Clinical Site

UCLA Health

📍 Los Angeles, CA

🔬 UDN

Baylor College of Medicine UDN Clinical Site

Baylor College of Medicine

📍 Houston, TX

🔬 UDN

Harvard/MGH UDN Clinical Site

Massachusetts General Hospital

📍 Boston, MA

🏥 NORD

Mayo Clinic Center for Individualized Medicine

Mayo Clinic

📍 Rochester, MN

👤 Mayo Clinic Center for Individualized Medicine

🏥 NORD

UCLA Rare Disease Day Program

UCLA Health

📍 Los Angeles, CA

Financial Resources

1 resources

Moctanin

Ethitek Pharmaceuticals, Inc.

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Caregiver Resources

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Common questions about Chromosome Y microdeletion syndrome

What is Chromosome Y microdeletion syndrome?

Chromosome Y microdeletion syndrome, also known as Y chromosome microdeletion or AZF (azoospermia factor) microdeletion, is a genetic condition caused by the loss of small segments of DNA on the Y chromosome. These microdeletions primarily affect the long arm of the Y chromosome (Yq11) in regions known as AZFa, AZFb, and AZFc, which contain genes critical for normal sperm production (spermatogenesis). The condition is one of the most common known genetic causes of male infertility. The primary body system affected is the male reproductive system. Men with Y chromosome microdeletions typically

At what age does Chromosome Y microdeletion syndrome typically begin?

Typical onset of Chromosome Y microdeletion syndrome is adult. Age of onset can vary across affected individuals.

What treatment and support options exist for Chromosome Y microdeletion syndrome?

1 patient support program are currently tracked on UniteRare for Chromosome Y microdeletion syndrome. See the treatments and support programs sections for copay assistance, eligibility, and contact details.