Cernunnos-XLF deficiency

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ORPHA:169079OMIM:611291D81.1
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Overview

Cernunnos-XLF deficiency, also known as immunodeficiency with microcephaly or nonhomologous end-joining factor 1 (NHEJ1) deficiency, is an extremely rare autosomal recessive primary immunodeficiency disorder caused by mutations in the NHEJ1 gene (also called CERNUNNOS or XLF). This gene encodes a protein essential for the nonhomologous end-joining (NHEJ) DNA repair pathway, which is critical for both V(D)J recombination in immune cell development and for general DNA double-strand break repair throughout the body. The disease primarily affects the immune system and the central nervous system. Patients present with severe combined immunodeficiency (SCID) or combined immunodeficiency characterized by profound T-cell and B-cell lymphopenia, hypogammaglobulinemia, and increased susceptibility to severe and recurrent infections. A hallmark feature is microcephaly (abnormally small head), which is present from birth and reflects the role of NHEJ1 in brain development. Additional features may include intrauterine growth retardation, bird-like facial features, and increased cellular sensitivity to ionizing radiation. Some patients may also exhibit developmental delay and bone marrow failure. Treatment is primarily supportive and includes antimicrobial prophylaxis, immunoglobulin replacement therapy, and management of infections. Hematopoietic stem cell transplantation (HSCT) is the definitive treatment for the immunological component of the disease and can restore immune function, although it does not correct the microcephaly or neurological features. Due to the underlying DNA repair defect, conditioning regimens for transplantation must be carefully adjusted to minimize toxicity, as patients have heightened sensitivity to DNA-damaging agents. The prognosis without transplantation is poor due to life-threatening infections.

Also known as:

Clinical phenotype terms— hover any for plain English:

Bird-like faciesHP:0000320Recurrent viral infectionsHP:0004429Decreased total T cell countHP:0005403Decreased total B cell countHP:0010976
Inheritance

Autosomal recessive

Passed on when both parents carry the same gene change; often skips generations

Age of Onset

Neonatal

Begins at or shortly after birth (first 4 weeks)

Orphanet ↗OMIM ↗NORD ↗

Treatments

No FDA-approved treatments are currently listed for Cernunnos-XLF deficiency.

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No actively recruiting trials found for Cernunnos-XLF deficiency at this time.

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No specialists are currently listed for Cernunnos-XLF deficiency.

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Treatment Centers

8 centers
🏥 NORD

Baylor College of Medicine Rare Disease Center

Baylor College of Medicine

📍 Houston, TX

🏥 NORD

Stanford Medicine Rare Disease Center

Stanford Medicine

📍 Stanford, CA

🔬 UDN

NIH Clinical Center Undiagnosed Diseases Program

National Institutes of Health

📍 Bethesda, MD

🔬 UDN

UCLA UDN Clinical Site

UCLA Health

📍 Los Angeles, CA

🔬 UDN

Baylor College of Medicine UDN Clinical Site

Baylor College of Medicine

📍 Houston, TX

🔬 UDN

Harvard/MGH UDN Clinical Site

Massachusetts General Hospital

📍 Boston, MA

🏥 NORD

Mayo Clinic Center for Individualized Medicine

Mayo Clinic

📍 Rochester, MN

👤 Mayo Clinic Center for Individualized Medicine

🏥 NORD

UCLA Rare Disease Day Program

UCLA Health

📍 Los Angeles, CA

Travel Grants

No travel grants are currently matched to Cernunnos-XLF deficiency.

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Community

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Common questions about Cernunnos-XLF deficiency

What is Cernunnos-XLF deficiency?

Cernunnos-XLF deficiency, also known as immunodeficiency with microcephaly or nonhomologous end-joining factor 1 (NHEJ1) deficiency, is an extremely rare autosomal recessive primary immunodeficiency disorder caused by mutations in the NHEJ1 gene (also called CERNUNNOS or XLF). This gene encodes a protein essential for the nonhomologous end-joining (NHEJ) DNA repair pathway, which is critical for both V(D)J recombination in immune cell development and for general DNA double-strand break repair throughout the body. The disease primarily affects the immune system and the central nervous system.

How is Cernunnos-XLF deficiency inherited?

Cernunnos-XLF deficiency follows a autosomal recessive inheritance pattern. Genetic counseling can help families understand recurrence risk and testing options.

At what age does Cernunnos-XLF deficiency typically begin?

Typical onset of Cernunnos-XLF deficiency is neonatal. Age of onset can vary across affected individuals.