Overview
2p21 microdeletion syndrome (also known as cystinuria-hypotonia-intellectual disability syndrome or hypotonia-cystinuria syndrome) is a rare chromosomal disorder caused by a contiguous gene deletion on the short arm of chromosome 2 at band p21. The deletion typically encompasses several genes, most notably SLC3A1 (associated with cystinuria) and PREPL (associated with hypotonia and neurodevelopmental features). The size of the deletion can vary among affected individuals, which influences the range and severity of symptoms. The syndrome primarily affects the nervous system, kidneys, and musculoskeletal system. Key clinical features include neonatal or infantile hypotonia (low muscle tone), feeding difficulties in early life, intellectual disability of variable severity, growth retardation, and cystinuria — a condition in which excessive amounts of the amino acid cystine are excreted in the urine, predisposing individuals to recurrent kidney stones. Some patients may also exhibit facial dysmorphism, obesity in later childhood, and speech and motor developmental delays. Management of 2p21 microdeletion syndrome is symptomatic and supportive. Treatment of cystinuria involves high fluid intake, urinary alkalinization, and sometimes medications such as tiopronin or D-penicillamine to reduce cystine stone formation. Hypotonia and developmental delays are addressed through early intervention programs including physical therapy, occupational therapy, and speech therapy. There is currently no cure for this condition, and long-term follow-up with a multidisciplinary team including nephrologists, neurologists, and developmental specialists is recommended.
Also known as:
Clinical phenotype terms— hover any for plain English:
Autosomal recessive
Passed on when both parents carry the same gene change; often skips generations
Neonatal
Begins at or shortly after birth (first 4 weeks)
Treatments
No FDA-approved treatments are currently listed for 2p21 microdeletion syndrome.
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Specialists
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Treatment Centers
8 centersBaylor College of Medicine Rare Disease Center ↗
Baylor College of Medicine
📍 Houston, TX
🏥 NORDStanford Medicine Rare Disease Center ↗
Stanford Medicine
📍 Stanford, CA
🔬 UDNNIH Clinical Center Undiagnosed Diseases Program ↗
National Institutes of Health
📍 Bethesda, MD
🔬 UDNUCLA UDN Clinical Site ↗
UCLA Health
📍 Los Angeles, CA
🔬 UDNBaylor College of Medicine UDN Clinical Site ↗
Baylor College of Medicine
📍 Houston, TX
🔬 UDNHarvard/MGH UDN Clinical Site ↗
Massachusetts General Hospital
📍 Boston, MA
🏥 NORDMayo Clinic Center for Individualized Medicine ↗
Mayo Clinic
📍 Rochester, MN
👤 Mayo Clinic Center for Individualized Medicine
🏥 NORDUCLA Rare Disease Day Program ↗
UCLA Health
📍 Los Angeles, CA
Travel Grants
No travel grants are currently matched to 2p21 microdeletion syndrome.
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Common questions about 2p21 microdeletion syndrome
What is 2p21 microdeletion syndrome?
2p21 microdeletion syndrome (also known as cystinuria-hypotonia-intellectual disability syndrome or hypotonia-cystinuria syndrome) is a rare chromosomal disorder caused by a contiguous gene deletion on the short arm of chromosome 2 at band p21. The deletion typically encompasses several genes, most notably SLC3A1 (associated with cystinuria) and PREPL (associated with hypotonia and neurodevelopmental features). The size of the deletion can vary among affected individuals, which influences the range and severity of symptoms. The syndrome primarily affects the nervous system, kidneys, and muscu
How is 2p21 microdeletion syndrome inherited?
2p21 microdeletion syndrome follows a autosomal recessive inheritance pattern. Genetic counseling can help families understand recurrence risk and testing options.
At what age does 2p21 microdeletion syndrome typically begin?
Typical onset of 2p21 microdeletion syndrome is neonatal. Age of onset can vary across affected individuals.